Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs12696304
rs12696304
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE [CC] genotype of rs16847897 and [GG] genotype of rs12696304 together increased the risk of T2DM significantly [OR = 1.7, p = 0.004]. 26720590

2015

dbSNP: rs16847897
rs16847897
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE [CC] genotype of rs16847897 and [GG] genotype of rs12696304 together increased the risk of T2DM significantly [OR = 1.7, p = 0.004]. 26720590

2015

dbSNP: rs13266634
rs13266634
Diabetes Mellitus, Non-Insulin-Dependent
1.000 GeneticVariation BEFREE ZnT8 null mice have a mild phenotype with a slight decrease in glucose tolerance, whereas patients with the ZnT8 R325W polymorphism (rs13266634) have decreased proinsulin staining and susceptibility to T2DM. 27899481

2017

dbSNP: rs367543060
rs367543060
Diabetes Mellitus, Non-Insulin-Dependent
0.020 GeneticVariation BEFREE Yet, there was no significant association of GIPR rs1800437 or GLP-1R rs367543060 with T2DM risk. 28744963

2017

dbSNP: rs1535500
rs1535500
Diabetes Mellitus, Non-Insulin-Dependent
0.830 GeneticVariation BEFREE With the exception of four SNPs (CMIP rs16955379, PEPD rs3786897, PSMD6 rs831571, ZFAND3 rs9470794), the other SNPs had the same direction of effect (odds ratio [OR]>1.0) as in the original reports, especially GLIS3 rs7041847 and KCNK16 rs1535500 were significantly associated with type 2 diabetes (rs1535500: p=0.005, OR=1.224, 95% CI 1.062-1.409; rs7041847: p=0.035, OR=1.118, 95% CI 1.070-1.388). 31145772

2019

dbSNP: rs7041847
rs7041847
Diabetes Mellitus, Non-Insulin-Dependent
0.820 GeneticVariation BEFREE With the exception of four SNPs (CMIP rs16955379, PEPD rs3786897, PSMD6 rs831571, ZFAND3 rs9470794), the other SNPs had the same direction of effect (odds ratio [OR]>1.0) as in the original reports, especially GLIS3 rs7041847 and KCNK16 rs1535500 were significantly associated with type 2 diabetes (rs1535500: p=0.005, OR=1.224, 95% CI 1.062-1.409; rs7041847: p=0.035, OR=1.118, 95% CI 1.070-1.388). 31145772

2019

dbSNP: rs9470794
rs9470794
Diabetes Mellitus, Non-Insulin-Dependent
0.810 GeneticVariation BEFREE With the exception of four SNPs (CMIP rs16955379, PEPD rs3786897, PSMD6 rs831571, ZFAND3 rs9470794), the other SNPs had the same direction of effect (odds ratio [OR]>1.0) as in the original reports, especially GLIS3 rs7041847 and KCNK16 rs1535500 were significantly associated with type 2 diabetes (rs1535500: p=0.005, OR=1.224, 95% CI 1.062-1.409; rs7041847: p=0.035, OR=1.118, 95% CI 1.070-1.388). 31145772

2019

dbSNP: rs831571
rs831571
Diabetes Mellitus, Non-Insulin-Dependent
0.830 GeneticVariation BEFREE With the exception of four SNPs (CMIP rs16955379, PEPD rs3786897, PSMD6 rs831571, ZFAND3 rs9470794), the other SNPs had the same direction of effect (odds ratio [OR]>1.0) as in the original reports, especially GLIS3 rs7041847 and KCNK16 rs1535500 were significantly associated with type 2 diabetes (rs1535500: p=0.005, OR=1.224, 95% CI 1.062-1.409; rs7041847: p=0.035, OR=1.118, 95% CI 1.070-1.388). 31145772

2019

dbSNP: rs3786897
rs3786897
Diabetes Mellitus, Non-Insulin-Dependent
0.820 GeneticVariation BEFREE With the exception of four SNPs (CMIP rs16955379, PEPD rs3786897, PSMD6 rs831571, ZFAND3 rs9470794), the other SNPs had the same direction of effect (odds ratio [OR]>1.0) as in the original reports, especially GLIS3 rs7041847 and KCNK16 rs1535500 were significantly associated with type 2 diabetes (rs1535500: p=0.005, OR=1.224, 95% CI 1.062-1.409; rs7041847: p=0.035, OR=1.118, 95% CI 1.070-1.388). 31145772

2019

dbSNP: rs16955379
rs16955379
Diabetes Mellitus, Non-Insulin-Dependent
0.810 GeneticVariation BEFREE With the exception of four SNPs (CMIP rs16955379, PEPD rs3786897, PSMD6 rs831571, ZFAND3 rs9470794), the other SNPs had the same direction of effect (odds ratio [OR]>1.0) as in the original reports, especially GLIS3 rs7041847 and KCNK16 rs1535500 were significantly associated with type 2 diabetes (rs1535500: p=0.005, OR=1.224, 95% CI 1.062-1.409; rs7041847: p=0.035, OR=1.118, 95% CI 1.070-1.388). 31145772

2019

dbSNP: rs516946
rs516946
Diabetes Mellitus, Non-Insulin-Dependent
0.820 GeneticVariation BEFREE With respect to rs516946, individuals carrying TT or CT exhibited a decreased risk of T2DM compared with those with the CC allele (adjusted P=0.040, OR=0.79; 95% CI, 0.63-0.99). 28912869

2017

dbSNP: rs10761600
rs10761600
Diabetes Mellitus, Non-Insulin-Dependent
0.020 GeneticVariation BEFREE With respect to rs10761600, AT contributed to a higher risk of T2DM compared with AA (adjusted by sex, age, and BMI, P= 0.013, OR = 1.585, 95% CI 1.101-2.282), while TT also increased the risk of presenting with T2DM compared with AA or A (adjusted by sex, age, and BMI, P= 0.004, OR = 1.632, 95% CI 1.166-2.284). 28469100

2017

dbSNP: rs35927125
rs35927125
Diabetes Mellitus, Non-Insulin-Dependent
0.060 GeneticVariation BEFREE With respect to Q62R, despite >99% power to detect an association of the previously published magnitude, Q62R was not associated with type 2 diabetes (pooled odds ratio 0.97 [95% CI 0.88-1.08], P = 0.63). 17130512

2006

dbSNP: rs854560
rs854560
Diabetes Mellitus, Non-Insulin-Dependent
0.060 GeneticVariation BEFREE With regard to the PON1 L55M polymorphism, significant protective effects of the 55M allele on T2DM under the heterozygous (OR = 0.77, 95% CI = 0.61-0.97) and dominant (OR = 0.80, 95% CI = 0.65-0.99) genetic models were found in the European population, while no significant associations in the Asian populations under all genetic models (P > 0.05). 29314660

2018

dbSNP: rs25487
rs25487
Diabetes Mellitus, Non-Insulin-Dependent
0.020 GeneticVariation BEFREE While Val762Ala polymorphism was associated with reduced susceptibility to DR, the Arg399Gln polymorphism contributed an elevated to risk for DR in South-Indian T2DM individuals. 24621175

2016

dbSNP: rs548450663
rs548450663
ACE
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE While Val762Ala polymorphism was associated with reduced susceptibility to DR, the Arg399Gln polymorphism contributed an elevated to risk for DR in South-Indian T2DM individuals. 24621175

2016

dbSNP: rs375442845
rs375442845
ACE
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE While Val762Ala polymorphism was associated with reduced susceptibility to DR, the Arg399Gln polymorphism contributed an elevated to risk for DR in South-Indian T2DM individuals. 24621175

2016

dbSNP: rs10830963
rs10830963
Diabetes Mellitus, Non-Insulin-Dependent
0.900 GeneticVariation BEFREE While marginal evidence of interaction between self-reported morningness-eveningness preference and rs10830963 in risk of type 2 diabetes was seen, this interaction did not persist when analysis was expanded to include all participants regardless of employment status and when accelerometer-derived sleep midpoint was used as an objective measure of morningness-eveningness preference. 31757795

2020

dbSNP: rs10010131
rs10010131
Diabetes Mellitus, Non-Insulin-Dependent
0.060 GeneticVariation BEFREE While FTO rs8050136 and rs17817449, ADAMTS9 rs4607103, and WFS1 rs10010131 were initially associated with T2DM, this was lost upon multiple testing correction. 24145053

2013

dbSNP: rs4607103
rs4607103
Diabetes Mellitus, Non-Insulin-Dependent
0.840 GeneticVariation BEFREE While FTO rs8050136 and rs17817449, ADAMTS9 rs4607103, and WFS1 rs10010131 were initially associated with T2DM, this was lost upon multiple testing correction. 24145053

2013

dbSNP: rs10455872
rs10455872
LPA
Diabetes Mellitus, Non-Insulin-Dependent
0.030 GeneticVariation BEFREE While an Lp(a)-T2D association was observed in the combined analysis (meta-effect of OR [95% CI] = 0.91 [0.87-0.96] per quintile, p = 1.3x10<sup>-4</sup>), we found no evidence of causality in the Lp(a)-T2D association (p = 0.29, fixed effect model) when using the variant rs10455872 as the instrumental variable in the MR analyses. 28866807

2017

dbSNP: rs1136410
rs1136410
Diabetes Mellitus, Non-Insulin-Dependent
0.030 GeneticVariation BEFREE While Val762Ala polymorphism was associated with reduced susceptibility to DR, the Arg399Gln polymorphism contributed an elevated to risk for DR in South-Indian T2DM individuals. 24621175

2016

dbSNP: rs747223144
rs747223144
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE Whereas each polymorphism studied (T45G, G276T, and A349G) was not significantly associated with type 2 diabetes mellitus, the haplotype GGA was overrepresented in our diabetic population (9.3% against 3.1% in NGT individuals, P=.0003). 19269196

2010

dbSNP: rs4430796
rs4430796
Diabetes Mellitus, Non-Insulin-Dependent
0.870 GeneticVariation BEFREE Where type 2 diabetes was the outcome, only one statistically significant interaction effect was observed, and this was for the HNF1B rs4430796 variant (P(interaction) = 0.0004). 19324937

2009

dbSNP: rs2070424
rs2070424
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE When the joint effects were examined, individuals with rs2070424 AA</span> genotype and the highest tertile of plasma copper concentration had a much higher risk of IGR&T2D (OR 5.34, 95% CI 3.48-8.21) than those with rs2070424 GG genotype and the lowest tertile of plasma copper concentrations. 30909159

2019